You will have to take the Sfio directory from a pre 44R19 incremental.
John Stockwell Visit: https://wiki.Seismic-Unix.org The new home of Seismic Un*x
On Apr 19, 2021, at 11:13 PM, Fernando M. Roxo da Motta petro@roxo.org wrote:
On Mon, 19 Apr 2021 19:07:31 +0200, Dominique ROUSSET dominique.rousset@univ-pau.fr wrote:
Hi, consider R21 as a beta release and send the problems to the list. John has uploaded R22 on the seismic-unix.org repository, with some modifications (mainly the the C++ style comments //)
Hi Dominique, I gave a try to R22 as well and got exactly the same problems I got with R21. The same circumvention I used with R21 "fixed" the build of R22.
As with R21, I was unable to run 'make sfinstall' and got the same error.
All the best.
The most serious problem for the moment is the impossibility to compile (and link) XDR code in Ubuntu 20.10 and 21.04 (glibc 2.33). It is an Ubuntu bug. Code compiled with 20.04 can be run on 20.10 and 21.04.
Fedora 33 and ArchLinux, which also use novel glibc (2.32 and 2.33) are OK but they need specific CFLAGS.
Ubuntu 20.04 and Debian use more traditional glibc 2.31 and there are no problems.
D.
Le 19/04/2021 à 16:10, Fernando M. Roxo da Motta a écrit : On Wed, 31 Mar 2021 19:02:45 +0100, Halitim Bachir bhalitim@gmail.com wrote:
Thanks much John;
Just for your information i previously compiled the cwp_su_all_44R19.tgz without problem but after downloading the R21 and tried to compile i have the following error :
Sincere regards
Bachir
Hi Bachir and list,
I was giving a try in building SU in a Ubuntu 20.04 with all updates and stumbled in the same problem. BTW, I have:
$ gcc --version gcc (Ubuntu 9.3.0-17ubuntu1~20.04) 9.3.0
GCC version may be an important factor bellow.
Beside this 'isfinite' error, there are a bunch of errors due to the use of '//' as comment in many codes. The error issued was that this is invalid in C90 standard.
I edited the Makefile.config changing the line:
OPTC = -g -std=c90 -m64 -Wall -ansi -Wno-long-long
To
OPTC = -g -m64 -Wall -Wno-long-long
That is, removing references to standards. The build of C code went without problem.
During 'make finstall' I got the error:
gfortran: error: unrecognized command line option ‘-fallow-argument-mismatch’; did you mean ‘-Wno-argument-mismatch’?
I edited the Makefile.config changing the line:
FFLAGS = $(FOPTS) -ffixed-line-length-none -fallow-argument-mismatch
To
FFLAGS = $(FOPTS) -ffixed-line-length-none -Wno-argument-mismatch
And the Fortran code proceeded without problem.
The only problem I still have is in 'make sfinstall' with the error:
cd Stdio_s; make -f Makefile LIBTYPE="-Dvt_threaded=0" SHELL="/bin/sh" \ CC="cc" CCMODE="-O" CXFLAGS="" make[4]: Entrando no diretório '/usr/local/geof/cwp-44R21/src/Sfio/src/lib/sfio/Stdio_s' cc -c -I. -I.. -O -Dvt_threaded=0 stdfgetc.c In file included from /usr/include/wchar.h:43, from ../sfhdr.h:304, from stdio_s.h:11, from stdfgetc.c:1: /usr/include/x86_64-linux-gnu/bits/types/__FILE.h:5:25: error: conflicting types for ‘__FILE’ 5 | typedef struct _IO_FILE __FILE; | ^~~~~~ In file included from stdfgetc.c:1: stdio_s.h:8:25: note: previous declaration of ‘__FILE’ was here 8 | typedef struct _sfio_s *__FILE; | ^~~~~~
Seems that there is some conflict in __FILE definition somewhere to be looked into.
HTH
sunan.c: In function ‘main’: sunan.c:80:7: warning: implicit declaration of function ‘isfinite’ [-Wimplicit-function-declaration] if(!isfinite(tr.data[i])) { ^ /tmp/cct49nLD.o: In function `main': /home/cwp/cwp/src/su/main/amplitudes/sunan.c:80: undefined reference to `isfinite' /home/cwp/cwp/src/su/main/amplitudes/sunan.c:86: undefined reference to `isfinite' /home/cwp/cwp/src/su/main/amplitudes/sunan.c:88: undefined reference to `isfinite' /home/cwp/cwp/src/su/main/amplitudes/sunan.c:90: undefined reference to `isfinite' /home/cwp/cwp/src/su/main/amplitudes/sunan.c:91: undefined reference to `isfinite' collect2: error: ld returned 1 exit status make[3]: [/home/cwp/cwp/bin/sunan] Error 1 (ignored) chmod: cannot access ‘/home/cwp/cwp/bin/sunan’: No such file or directory make[3]: *** [/home/cwp/cwp/bin/sunan] Error 1 make[3]: Leaving directory `/home/cwp/cwp/src/su/main/amplitudes' make[2]: *** [INSTALL] Error 2 make[2]: Leaving directory `/home/cwp/cwp/src/su/main' make[1]: *** [INSTALL] Error 2 make[1]: Leaving directory `/home/cwp/cwp/src/su' make: *** [sustuff] Error 2
On Tue, Mar 30, 2021 at 7:17 PM John Stockwell john.19071969@gmail.com wrote:
Dear Seismic Unix user,
I have put some fixes in for the Fortran codes and for the SFIO installations so that you should be able to install everything. Mac OS X Big Sur was a painful upgrade. As you might guess, I am preparing for Release 45.
If you have codes that can be shared under the Berkeley style license (no GPL), that is in the style of SU, but honors the existing header structure, has a demo that generates its own data, and that you would like to have included in SU, please email me at: john.19071969@gmail.com so we can discuss how best to include the code.
Thank you for using Seismic Un*x.
John Stockwell | john.19071969@gmail.com https://wiki.Seismic-Unix.org (The New Home of Seismic Un*x)
——— Release notes for 44R21 ----
Summer 2018 - Thanks to Dominque Rousset of the University of Pau, Seismic Unix distributions and other information may be found at
https://wiki.seismic-unix.org Installation tip. If you get error messages regarding the XDR materials you may need to install libtirpc from your Linux distribution.
John Stockwell retired from the Colorado School of Mines effective 1 Jan 2018. He continues to work with Seismic Unix. Please email: john.19071969@gmail.com john.19071969@gmail.com if you have questions, or if you want to supply bug fixes or new SU code.
What is new in the SU package:
character*120 fnames(2) from fnames(3) Thanks to Fernando Roxo da MottaFortran/Raytrace3d/ktime_3d_rayq.f - ERROR of argument mismatch in two locations. fix: added -fallow-argument-mismatch to the FFLAGS in Makefile.config_Big_Sur this might need to be propagated to all of the Makefile.config_* and this likely takes care of the vzestf.f error as well.
Sfio/ Replaced these files with versions from the 2002 release of sfio. ./src/lib/sfio/Stdio_b/sprintf.c ./src/lib/sfio/Stdio_b/vsprintf.c ./src/lib/sfio/Stdio_s/stdsprintf.c The make sfio should work now.
demos/Ordinary_differential_equations - has been added to go with the new ordinary_differential equation items in par/main
John Stockwell | john.19071969@gmail.com https://wiki.Seismic-Unix.org (The New Home of Seismic Un*x) 58 Johns-iMac.local> more news44RXX Summer 2018 - Thanks to Dominque Rousset of the University of Pau, Seismic Unix distributions and other information may be found at
https://wiki.seismic-unix.org Installation tip. If you get error messages regarding the XDR materials you may need to install libtirpc from your Linux distribution.
John Stockwell retired from the Colorado School of Mines effective 1 Jan 2018. He continues to work with Seismic Unix. Please email: john.19071969@gmail.com john.19071969@gmail.com if you have questions, or if you want to supply bug fixes or new SU code.
What is new in the SU package:
Restructuring: par/main
is now:
par/main/apertures par/main/cellular_automata par/main/data_conversion par/main/material_parameters par/main/ordinary_differential_equations par/main/parameter_file_utilities par/main/plotting_utilities par/main/ray_theory par/main/refraction par/main/resampling par/main/smoothing par/main/statistics par/main/velocity_model_building par/main/velocity_perturbation par/main/wavelet_transform
New: ramac2su - converts RAMAC GPR files to su format with a nominal geometry Thanks to: Hervé Perrou,d 12/2000and Dominique Rousset, 2019 of the Universith of Pau configs/Makefile.config_Linux_Ubuntu Makefile.config_Mac_OSX_Mojave Makefile.config_Linux_Fedora_32 Makefile.config_Linux_ARCH Makefile.config_MacOSX_Catalina Makefile.config_Mac_OSX_Big_SUR par/main/ordinary_differential_equations logisticfit.c - extract growth and carrying capacity for logistic model seirepidemic.c - SEIR epidemic model sirepidemic.c - SIR epidemic model sirdepidemic.c - SIRD epidemic model voltlotka.c - classic Lotka Volterra predator-prey model demos/Ordinary_differential_equations Epidemiology Logistic_Equation Predator_Prey
Fixed: su/main/amplitudes/sugain.c - fixed a but in the AGC function seen on GPR data but not apparent on seismic data Thanks to Dominique Rousset of the University of Pau
su/lib/getSPSfile.c - replaced // comments with /* comments */ owing to a problem on CENTOS version 7. Fortran/Vzest/vzestf.f - changed (about line 1119) to character*120 fnames(2) from fnames(3) Thanks to Fernando Roxo da Motta Fortran/Raytrace3d/ktime_3d_rayq.f - ERROR of argument mismatch in two locations. fix: added -fallow-argument-mismatch to the FFLAGS in Makefile.config_Big_Sur this might need to be propagated to all of the Makefile.config_* and this likely takes care of the vzestf.f error as well.
Sfio/ Replaced these files with versions from the 2002 release of sfio. ./src/lib/sfio/Stdio_b/sprintf.c ./src/lib/sfio/Stdio_b/vsprintf.c ./src/lib/sfio/Stdio_s/stdsprintf.c The make sfio should work now.
demos/Ordinary_differential_equations - has been added to go with the new ordinary_differential equation items in par/main
John Stockwell | john.19071969@gmail.com https://wiki.Seismic-Unix.org (The New Home of Seismic Unix)
Seisunix mailing list Seisunix@mailman.seismic-unix.org https://mailman.seismic-unix.org/listinfo/seisunix
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-- ---------------- Non luctari, ludare -------------------+ WYSIWYG Fernando M. Roxo da Motta petro@roxo.org | Editor? Except where explicitly stated I speak on my own behalf.| VI !! PU5RXO | PX5Q6048 | I see text, ------------ Quis custodiet ipsos custodes?-------------+ I get text!
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