> the new ordinary_differential equation items in par/main > > > John Stockwell  | john.19071969(a)gmail.com > https://wiki.Seismic-Unix.org <https://wiki.Seismic-Unix.org> > (The New Home of Seismic Unix) > > _______________________________________________ > Seisunix mailing list > Seisunix(a)mailman.seismic-unix.org > https://mailman.seismic-unix.org/listinfo/seisunix >

On Wed, 31 Mar 2021 19:02:45 +0100, Halitim Bachir &lt;bhalitim(a)gmail.com&gt; wrote: > Thanks much John; > > Just for your information i previously compiled the > cwp_su_all_44R19.tgz without problem but after downloading the R21 > and tried to compile i have the following error : > > Sincere regards > > Bachir Hi Bachir and list, I was giving a try in building SU in a Ubuntu 20.04 with all updates and stumbled in the same problem. BTW, I have: $ gcc --version gcc (Ubuntu 9.3.0-17ubuntu1~20.04) 9.3.0 GCC version may be an important factor bellow. Beside this 'isfinite' error, there are a bunch of errors due to the use of '//' as comment in many codes. The error issued was that this is invalid in C90 standard. I edited the Makefile.config changing the line: OPTC = -g -std=c90 -m64 -Wall -ansi -Wno-long-long To OPTC = -g -m64 -Wall -Wno-long-long That is, removing references to standards. The build of C code went without problem. During 'make finstall' I got the error: gfortran: error: unrecognized command line option ‘-fallow-argument-mismatch’; did you mean ‘-Wno-argument-mismatch’? I edited the Makefile.config changing the line: FFLAGS = $(FOPTS) -ffixed-line-length-none -fallow-argument-mismatch To FFLAGS = $(FOPTS) -ffixed-line-length-none -Wno-argument-mismatch And the Fortran code proceeded without problem. The only problem I still have is in 'make sfinstall' with the error: cd Stdio_s; make -f Makefile LIBTYPE="-Dvt_threaded=0" SHELL="/bin/sh" \ CC="cc" CCMODE="-O" CXFLAGS="" make[4]: Entrando no diretório '/usr/local/geof/cwp-44R21/src/Sfio/src/lib/sfio/Stdio_s' cc -c -I. -I.. -O -Dvt_threaded=0 stdfgetc.c In file included from /usr/include/wchar.h:43, from ../sfhdr.h:304, from stdio_s.h:11, from stdfgetc.c:1: /usr/include/x86_64-linux-gnu/bits/types/__FILE.h:5:25: error: conflicting types for ‘__FILE’ 5 | typedef struct _IO_FILE __FILE; | ^~~~~~ In file included from stdfgetc.c:1: stdio_s.h:8:25: note: previous declaration of ‘__FILE’ was here 8 | typedef struct _sfio_s *__FILE; | ^~~~~~ Seems that there is some conflict in __FILE definition somewhere to be looked into. HTH > sunan.c: In function ‘main’: > sunan.c:80:7: warning: implicit declaration of function ‘isfinite’ > [-Wimplicit-function-declaration] > if(!isfinite(tr.data[i])) { > ^ > /tmp/cct49nLD.o: In function `main': > /home/cwp/cwp/src/su/main/amplitudes/sunan.c:80: undefined > reference to `isfinite' > /home/cwp/cwp/src/su/main/amplitudes/sunan.c:86: undefined > reference to `isfinite' > /home/cwp/cwp/src/su/main/amplitudes/sunan.c:88: undefined > reference to `isfinite' > /home/cwp/cwp/src/su/main/amplitudes/sunan.c:90: undefined > reference to `isfinite' > /home/cwp/cwp/src/su/main/amplitudes/sunan.c:91: undefined > reference to `isfinite' > collect2: error: ld returned 1 exit status > make[3]: [/home/cwp/cwp/bin/sunan] Error 1 (ignored) > chmod: cannot access ‘/home/cwp/cwp/bin/sunan’: No such file or > directory make[3]: *** [/home/cwp/cwp/bin/sunan] Error 1 > make[3]: Leaving directory `/home/cwp/cwp/src/su/main/amplitudes' > make[2]: *** [INSTALL] Error 2 > make[2]: Leaving directory `/home/cwp/cwp/src/su/main' > make[1]: *** [INSTALL] Error 2 > make[1]: Leaving directory `/home/cwp/cwp/src/su' > make: *** [sustuff] Error 2 > > > > > On Tue, Mar 30, 2021 at 7:17 PM John Stockwell > &lt;john.19071969(a)gmail.com&gt; wrote: > >> Dear Seismic Unix user, >> >> I have put some fixes in for the Fortran codes and for the SFIO >> installations so that you should be able to install everything. >> Mac OS X Big Sur was a painful upgrade. As you might guess, I am >> preparing for Release 45. >> >> If you have codes that can be shared under the Berkeley style >> license (no GPL), that is in the style of SU, but honors the >> existing header structure, has a demo that generates its own data, >> and that you would like to have included in SU, please email me >> at: john.19071969(a)gmail.com so we can discuss how best to include >> the code. >> >> Thank you for using Seismic Un*x. >> >> >> John Stockwell | john.19071969(a)gmail.com >> https://wiki.Seismic-Unix.org >> (The New Home of Seismic Un*x) >> >> >> ——— Release notes for 44R21 ---- >> >> Summer 2018 - Thanks to Dominque Rousset of the University of Pau, >> Seismic Unix distributions and other information may be found at >> >> https://wiki.seismic-unix.org >> Installation tip. If you get error messages regarding the XDR >> materials you may need to install libtirpc from your Linux >> distribution. >> >> John Stockwell retired from the Colorado School of Mines effective >> 1 Jan 2018. He continues to work with Seismic Unix. >> Please email: john.19071969(a)gmail.com &lt;john.19071969(a)gmail.com&gt; if >> you have questions, or if you want to supply bug fixes or new SU >> code. >> >> >> What is new in the SU package: >> >> character*120 fnames(2) from fnames(3) >> Thanks to Fernando Roxo da Motta >> Fortran/Raytrace3d/ktime_3d_rayq.f - ERROR of argument mismatch in >> two locations. >> fix: added -fallow-argument-mismatch to the >> FFLAGS in Makefile.config_Big_Sur this might >> need to be propagated to all of the Makefile.config_* and this >> likely takes care of the vzestf.f error as well. >> >> Sfio/ >> Replaced these files with versions from the 2002 release >> of sfio. ./src/lib/sfio/Stdio_b/sprintf.c >> ./src/lib/sfio/Stdio_b/vsprintf.c >> ./src/lib/sfio/Stdio_s/stdsprintf.c >> The make sfio should work now. >> >> demos/Ordinary_differential_equations - has been added to go with >> the new ordinary_differential equation items in par/main >> >> >> John Stockwell | john.19071969(a)gmail.com >> https://wiki.Seismic-Unix.org >> (The New Home of Seismic Un*x) >> 58 Johns-iMac.local> more news44RXX Summer 2018 - Thanks to >> Dominque Rousset of the University of Pau, Seismic Unix >> distributions and other information may be found at >> >> https://wiki.seismic-unix.org >> Installation tip. If you get error messages regarding the XDR >> materials you may need to install libtirpc from your Linux >> distribution. >> >> John Stockwell retired from the Colorado School of Mines effective >> 1 Jan 2018. He continues to work with Seismic Unix. >> Please email: john.19071969(a)gmail.com &lt;john.19071969(a)gmail.com&gt; if >> you have questions, or if you want to supply bug fixes or new SU >> code. >> >> >> What is new in the SU package: >> >> Restructuring: >> par/main >> >> is now: >> >> par/main/apertures >> par/main/cellular_automata >> par/main/data_conversion >> par/main/material_parameters >> par/main/ordinary_differential_equations >> par/main/parameter_file_utilities >> par/main/plotting_utilities >> par/main/ray_theory >> par/main/refraction >> par/main/resampling >> par/main/smoothing >> par/main/statistics >> par/main/velocity_model_building >> par/main/velocity_perturbation >> par/main/wavelet_transform >> >> >> New: >> ramac2su - converts RAMAC GPR files to su format with a nominal >> geometry Thanks to: Hervé Perrou,d 12/2000and Dominique Rousset, >> 2019 >> of the Universith of Pau >> configs/Makefile.config_Linux_Ubuntu >> Makefile.config_Mac_OSX_Mojave >> Makefile.config_Linux_Fedora_32 >> Makefile.config_Linux_ARCH >> Makefile.config_MacOSX_Catalina >> Makefile.config_Mac_OSX_Big_SUR >> par/main/ordinary_differential_equations >> logisticfit.c - extract growth and carrying capacity for >> logistic model >> seirepidemic.c - SEIR epidemic model >> sirepidemic.c - SIR epidemic model >> sirdepidemic.c - SIRD epidemic model >> voltlotka.c - classic Lotka Volterra predator-prey model >> demos/Ordinary_differential_equations >> Epidemiology >> Logistic_Equation >> Predator_Prey >> >> Fixed: >> su/main/amplitudes/sugain.c - fixed a but in the AGC function seen >> on GPR data but not apparent on seismic data >> Thanks to Dominique Rousset of the University of >> Pau >> >> su/lib/getSPSfile.c - replaced // comments with /* comments */ >> owing to a problem on CENTOS version 7. >> Fortran/Vzest/vzestf.f - changed (about line 1119) to >> character*120 fnames(2) from fnames(3) >> Thanks to Fernando Roxo da Motta >> Fortran/Raytrace3d/ktime_3d_rayq.f - ERROR of argument mismatch in >> two locations. >> fix: added -fallow-argument-mismatch to the >> FFLAGS in Makefile.config_Big_Sur this might >> need to be propagated to all of the Makefile.config_* and this >> likely takes care of the vzestf.f error as well. >> >> Sfio/ >> Replaced these files with versions from the 2002 release >> of sfio. ./src/lib/sfio/Stdio_b/sprintf.c >> ./src/lib/sfio/Stdio_b/vsprintf.c >> ./src/lib/sfio/Stdio_s/stdsprintf.c >> The make sfio should work now. >> >> demos/Ordinary_differential_equations - has been added to go with >> the new ordinary_differential equation items in par/main >> >> >> John Stockwell | john.19071969(a)gmail.com >> https://wiki.Seismic-Unix.org >> (The New Home of Seismic Unix) >> >> _______________________________________________ >> Seisunix mailing list >> Seisunix(a)mailman.seismic-unix.org >> https://mailman.seismic-unix.org/listinfo/seisunix >> Roxo